Analyzing Population-Based Cancer Registry Data


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Documentation for package ‘canregtools’ version 0.2.8

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add_labels Add variable labels for data set.
ageadjust Calculate the age standardized rate using the direct method.
calc_age Calculate the actual age between two dates
check_canreg Check the class of 'canreg'
check_canreg.canreg Check the class of 'canreg'
check_canreg.canregs Check the class of 'canreg'
classify_childhood Classify pediatric tumors according to the ICCC3 standards.
classify_icd10 Classify ICD10 Codes to Cancer Categories.
clean_canreg Clean canreg data.
clean_canreg.FBcases Clean canreg data.
clean_canreg.population Clean canreg data.
clean_canreg.SWcases Clean canreg data.
cmerge Merge list
count_canreg Count canreg data.
count_canreg.canreg Count canreg data.
count_canreg.canregs Count canreg data.
create_age_rate Create age specific rate
create_age_rate.canreg Create age specific rate
create_age_rate.canregs Create age specific rate
create_age_rate.fbswicd Create age specific rate
create_age_rate.fbswicds Create age specific rate
create_asr Calculate Age-Standardized Rate (ASR)
create_asr.canreg Calculate Age-Standardized Rate (ASR)
create_asr.canregs Calculate Age-Standardized Rate (ASR)
create_asr.fbswicd Calculate Age-Standardized Rate (ASR)
create_asr.fbswicds Calculate Age-Standardized Rate (ASR)
create_quality Create quality indicators
create_quality.canreg Create quality indicators
create_quality.canregs Create quality indicators
create_quality.fbswicd Create quality indicators
create_quality.fbswicds Create quality indicators
create_ratio Title
create_ratio.fbswicd Title
create_report Create report from report templates
create_report.canreg Create report from report templates
create_report.canregs Create report from report templates
create_sheet Create sheet of cancer statistics
create_sheet.canreg Create sheet of cancer statistics
create_sheet.fbswicd Create sheet of cancer statistics
create_sheet.fbswicds Create sheet of cancer statistics
cr_merge Merge elements from objects of class canregs, fbswicds, or asrs
cr_merge.age_rates Merge elements from objects of class canregs, fbswicds, or asrs
cr_merge.asrs Merge elements from objects of class canregs, fbswicds, or asrs
cr_merge.canregs Merge elements from objects of class canregs, fbswicds, or asrs
cr_merge.fbswicds Merge elements from objects of class canregs, fbswicds, or asrs
cr_merge.qualities Merge elements from objects of class canregs, fbswicds, or asrs
cr_reframe Reframe data of class canregs or fbswicds
cr_reframe.canregs Reframe data of class canregs or fbswicds
cr_reframe.fbswicds Reframe data of class canregs or fbswicds
cr_select Select elements from objects with class '"canregs"', or '"fbswicds"'
cr_select.asrs Select elements from objects with class '"canregs"', or '"fbswicds"'
cr_select.canregs Select elements from objects with class '"canregs"', or '"fbswicds"'
cr_select.fbswicds Select elements from objects with class '"canregs"', or '"fbswicds"'
cr_select.summaries Select elements from objects with class '"canregs"', or '"fbswicds"'
cumrate Calculate the cumulative rate.
cumrisk Calculate the cumulative risk.
cutage Cut age into groups.
draw_bar Draw bar chart.
draw_barchart Draw group bar chart.
draw_dumbbell Plot dumbbell chart.
draw_line Draw line chart
draw_linechart Draw line chart
draw_pyramid Draw population pyramids.
draw_pyramid.fbswicd Draw pyramids from object of fbswicd.
drop_others Drop other cancer in cancer categories.
drop_total Drop the total cancer
estimate_pop Estimating population structure using interpolation method.
expand_age_pop Expand age groups population.
expand_lifetable Expand five-year(abridged) life table to one-year(complete) life table.
has_rows Check if the data frame has rows after filtering
load_canreg Load Example Data Set
ls_reframe_vars List names of variables could be used cr_reframe function.
ls_std_vars list all standard population names available
ls_summary_vars List names of variables produced by the summary function.
lt Calculate life table from mortality rates.
pyramid Plot population pyramid
read_canreg Read cancer registration data in the format reported to the National Cancer Center.
reframe_fbswicd Reframe data of class fbswicds
reframe_fbswicd.canregs Reframe data of class fbswicds
reframe_fbswicd.fbswicds Reframe data of class fbswicds
show_registry Title
summary.canreg Summary object of class 'canreg'
summary.canregs Summary object of class 'canreg'
tidy_age Tidy age description.
tidy_areacode Get attributes affiliated with the areacode
tidy_cancer Tidy cancer code
tidy_occu Tidy occupation codes or description.
tidy_sex Tidy gender variable
truncrate Calculate truncated age standardized rate.
write_areacode Write Six-digit administrative division code to the user defined dict.
write_registry Write registry attributes to the user-defined dictionary.
write_registry.data.frame Write registry attributes to the user-defined dictionary.
write_registry.list Write registry attributes to the user-defined dictionary.